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PUBLICATIONS

In Prep Work: 

Carlson, A.**, Siedlecki, S.A., Granger, J. (in prep) Quantifying interannual variability of shelf nutrients and associated hypoxia in St. Helena Bay with new metrics and tools

Siedlecki, S.A., MacCready, P., Norton, E., Alin, S.R., Sutton, A., et al. (in prep) Estuarine modification of regional carbon variables: The case of the Salish Sea

Submitted Work:

Nguyen, H.**, Siedlecki, S.A. et al (submitted) Temporal Trends of Deoxygenation in the Northwest Atlantic Ocean: an observational approach. JGR-Oceans

Alin, S. R., Newton, J. A., Feely, R. A., Siedlecki, S. A., and Greeley, D. J.: Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018), Biogeosciences Discuss. [preprint], https://doi.org/10.5194/bg-2023-181, in review, 2023.

Peer-Reviewed Work:

Chen, Z.*, Siedlecki, S., Long, M. et al. Skillful multiyear prediction of marine habitat shifts jointly constrained by ocean temperature and dissolved oxygen. Nat Commun 15, 900 (2024). https://doi.org/10.1038/s41467-024-45016-5

 

Michael J. Malick, Mary E. Hunsicker, Melissa A. Haltuch, Sandra L. Parker-Stetter, Kristin N. Marshall, John E. Pohl, Aaron M. Berger, Samantha A. Siedlecki, Stéphane Gauthier, and Albert J. Hermann. 2024. Spatially varying effects of the California Undercurrent on Pacific hake distribution. Canadian Journal of Fisheries and Aquatic Sciences. 81(2): 154-165. https://doi.org/10.1139/cjfas-2023-0202

Ross, A. C., Stock, C. A., Adcroft, A., Curchitser, E., Hallberg, R., Harrison, M. J., Hedstrom, K., Zadeh, N., Alexander, M., Chen, W., Drenkard, E. J., du Pontavice, H., Dussin, R., Gomez, F., John, J. G., Kang, D., Lavoie, D., Resplandy, L., Roobaert, A., Saba, V., Shin, S.-I., Siedlecki, S., and Simkins, J.: A high-resolution physical–biogeochemical model for marine resource applications in the northwest Atlantic (MOM6-COBALT-NWA12 v1.0), Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, 2023.

Siedlecki, S.A., S.R. Alin, E.L. Norton, N.A. Bond, A.J. Hermann, R.A. Feely, and J.A. Newton. 2023. Can seasonal forecasts of ocean conditions aid fishery managers? Experiences from 10 years of J-SCOPE. Oceanography 36(2–3):158–167, https://doi.org/​10.5670/oceanog.2023.219.

 

Segura-Noguera, M., Álvarez-Salgado, X. A., Siedlecki, S., & Hales, B. R. (2023). Short time-scale variability of ammonium, nitrate, and nitrogen loss dynamics during an upwelling-induced bloom at the Oregon shelf. Journal of Geophysical Research: Oceans, 128, e2022JC019025. https://doi.org/10.1029/2022JC019025

Saenger CP, McElhany P, Norton EL, Busch DS, Siedlecki SA, Alin SR, Feely RA, Hermann AJ and Bednarsˇek N (2023) Evaluating environmental controls on the exoskeleton density of larval Dungeness crab via micro computed tomography. Front. Mar. Sci. 10:1095253.doi: 10.3389/fmars.2023.1095253

Emily L Norton, Isaac C Kaplan, Samantha Siedlecki, Albert J Hermann, Simone R Alin, Jan Newton, Kelly Corbett, Daniel Ayres, Ervin Joe Schumacker, Nicholas A Bond, Kate Richerson, Michael A Alexander (2023) Seasonal ocean forecasts to improve predictions of Dungeness crab catch rates, co-developed with state and tribal fishery managers, ICES Journal of Marine Science, fsad010, https://doi.org/10.1093/icesjms/fsad010

 Ray, S.*, Bond, N., Siedlecki, S., & Hermann, A. J. (2022). Influence of winter subsurface on the following summer variability in Northern California Current System. Journal of Geophysical Research: Oceans, 127, e2022JC018577. https://doi.org/10.1029/2022JC018577

Sunday, J. M., Howard, E., Siedlecki, S., Pilcher, D. J., Deutsch, C., MacCready, P., Newton, J., & Klinger, T. (2022). Biological sensitivities to high-resolution climate change projections in the California current marine ecosystem. Global Change Biology, 28, 5726– 5740. https://doi.org/10.1111/gcb.16317

 

Essington, T.E., Anderson, S.C., Barnett, L.A.K., Berger, H.M., Siedlecki, S.A. and Ward, E.J. (2022), Advancing statistical models to reveal the effect of dissolved oxygen on the spatial distribution of marine taxa using thresholds and a physiologically based index. Ecography e06249. https://doi.org/10.1111/ecog.06249 

Baumann, H., Jones, L.F., Murray, C.S., Siedlecki, S.A., Alexander, M., and Cross, E.L. (2022) Impaired hatching exacerbates the high CO2 sensitivity of embryonic sand lance, Ammodytes dubius. Marine Ecology Progress Series 687:147-162

Newton, J., MacCready, P.M., Siedlecki, S.A., Manalang, D., Mickett, J., Alin, S.R., Sutton, A., Schumacker, E., Hagen, J., and R. Carini (2022) Multi-stressor observations and modeling to build understanding of and resilience to the coastal impacts of climate change. Oceanography.

Berger, H. M.**,  Siedlecki, S. A.,  Matassa, C. M.,  Alin, S. R.,  Kaplan, I. C.,  Hodgson, E. E., et al. (2021). Seasonality and life history complexity determine vulnerability of Dungeness crab to multiple climate stressors. AGU Advances,  2, e2021AV000456. https://doi.org/10.1029/2021AV000456

 

Siedlecki, S. A., Pilcher, D., Howard, E. M., Deutsch, C., MacCready, P., Norton, E. L., Frenzel, H., Newton, J., Feely, R. A., Alin, S. R., and Klinger, T.: Coastal processes modify projections of some climate-driven stressors in the California Current System, Biogeosciences, 18, 2871–2890, https://doi.org/10.5194/bg-18-2871-2021, 2021.

SA Siedlecki, J Salisbury, DK Gledhill, C Bastidas, S Meseck, K McGarry, CW Hunt, M Alexander, D Lavoie, ZA Wang, J Scott, DC Brady, I Mlsna, K Azetsu-Scott, CM Liberti, DC Melrose, MM White, A Pershing, D Vandemark, DW Townsend, C Chen, W Mook, R Morrison; Projecting ocean acidification impacts for the Gulf of Maine to 2050: New tools and expectations. Elementa: Science of the Anthropocene 21 January 2021; 9 (1): 00062. doi: https://doi.org/10.1525/elementa.2020.00062

McGarry, K.**, S.A. Siedlecki, J. Salisbury, and S. R. Alin (2021) Multiple linear regression models for reconstructing and exploring processes controlling the carbonate system of the northeast US from basic hydrographic data. JGR-Oceans, 126, e2020JC016480. https://doi.org/10.1029/2020JC016480

MacCready, P.,  McCabe, R. M.,  Siedlecki, S. A.,  Lorenz, M.,  Giddings, S. N.,  Bos, J., et al. (2021).  Estuarine circulation, mixing, and residence times in the Salish Sea. Journal of Geophysical Research: Oceans,  126, e2020JC016738. https://doi.org/10.1029/2020JC016738

Malick MJ, Siedlecki SA, Norton EL, Kaplan IC, Haltuch MA, Hunsicker ME, Parker-Stetter SL, Marshall KN, Berger AM, Hermann AJ, Bond NA and Gauthier S (2020) Environmentally Driven Seasonal Forecasts of Pacific Hake Distribution. Front. Mar. Sci. 7:578490. doi: 10.3389/fmars.2020.578490

 

Ray, S.*, Siedlecki, S. A., Alexander, M. A., Bond, N. A., & Hermann, A. J. (2020). Drivers of subsurface temperature variability in the Northern California Current. Journal of Geophysical Research: Oceans, 125, e2020JC016227. https://doi.org/10.1029/2020JC016227

Flynn, R. F.,  Granger, J.,  Veitch, J. A.,  Siedlecki, S.,  Burger, J. M.,  Pillay, K., &  Fawcett, S. E. ( 2020).  On‐shelf nutrient trapping enhances the fertility of the southern Benguela upwelling system. Journal of Geophysical Research: Oceans,  125, e2019JC015948. https://doi.org/10.1029/2019JC015948

Jacox, M. G., Alexander, M. A., Siedlecki, S., Chen, K., Kwon, Y.-O., Brodie, S., … Rykaczewski, R. (2020). Seasonal-to-interannual prediction of North American coastal marine ecosystems: Forecast methods, mechanisms of predictability, and priority developments. Progress in Oceanography, 183, 102307. https://doi.org/https://doi.org/10.1016/j.pocean.2020.102307

Norton, E., Siedlecki, S.A., Kaplan, I.C., Hermann, A.J., Fisher, J., Morgan, C., Officer, S., Saenger, C., Alin, S.A., Newton, J., Bednarsek, N., and R.A. Feely (2020) The Importance of Environmental Exposure History in Forecasting Dungeness Crab Megalopae, Occurrence Using J-SCOPE, a High-Resolution Model for the US Pacific Northwest. Frontiers in Marine Science, 7, 102. https://doi.org/10.3389/fmars.2020.00102

 

Bednaršek, N., Feely, R. A., Beck, M. W., Alin, S. R., Siedlecki, S. A., Calosi, P., … Spicer, J. I. (2020). Exoskeleton dissolution with mechanoreceptor damage in larval Dungeness crab related to severity of present-day ocean acidification vertical gradients. Science of The Total Environment, 716, 136610. https://doi.org/https://doi.org/10.1016/j.scitotenv.2020.136610

Capotondi, A., Jacox, M., Bowler, C., Kavanaugh, M.,  Lehodey, P., Barrie, D., Brodie, S., Chaffron, S., Cheng, W., Faggiani Dias, D., Eveillard, D., Guidi, L., Iudicone, D., Lovenduski, N., Nye, J.A., Ortiz, I., Pirhalla, D.E., Pozo Buil, M., Saba, V., Sheridan, S.C., Siedlecki, S.A., Subramanian, A., De Vargas, C., Di Lorenzo, E., Doney, S.C., Hermann, A.J., Joyce, T., Merrifield, M., Miller, A.J., Not, F., & S. Pesant (2019). Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems  . Frontiers in Marine Science. https://www.frontiersin.org/article/10.3389/fmars.2019.00623

 

L. Schmeisser, N. A. Bond, S. A. Siedlecki, & T. P. Ackerman, (2019) The role of clouds and surface heat fluxes in the maintenance of the 2013-2016 Northeast Pacific marine heatwave.  JGR-Atmospheres,, 124, 10, 772-10, 783. https://doi.org/10.1020/2019JD030780

 

Tilbrook, B., Jewett, E. B., DeGrandpre, M. D., Hernandez-Ayon, J. M., Feely, R. A., Gledhill, D. K., Hansson, L., Isensee, K., Kurz, M.L., Netwon, J.A., Siedlecki, S.A., Chai, F., Dupont, S., Graco, M., Calvo, E., Greeley, D., Kapsenberg, L., Lebrec, M., Pelejero, C., Schoo, K.L., and Telszewski, M. (2019). An Enhanced Ocean Acidification Observing Network: From People to Technology to Data Synthesis and Information Exchange. Frontiers in Marine Science, 6, 337. https://doi.org/10.3389/fmars.2019.00337

Fennel, K., Alin, S., Barbero, L., Evans, W., Bourgeois, T., Cooley, S., Dunne, J., Feely, R. A., Martin Hernandez-Ayon, J., Hu, X., Lohrenz, S., Muller-Karger, F., Najjar, R., Robbins, L., Shadwick, E., Siedlecki, S. A., Steiner, N., Sutton, A., Turk, D., Vlahos, P., & Aleck Wang, Z. (2019). Carbon cycling in the North American coastal ocean: A synthesis. Biogeosciences, (6 ed., vol. 16, pp. 1281-1304). https://doi.org/10.5194/bg-16-1281-2019

Barth, J. A., Allen, S. E., Dever, E. P., Dewey, R. K., Evans, W., Feely, R. A., Fisher, J. L., Fram, J. P., Hales, B., Ianson, D., Jackson, J., Juniper, K., Kawka, O., Kelley, D., Klymak, J. M., Konovsky, J., Kosro, P. M., Kurapov, A., Mayorga, E., MacCready, P., Newton, J., Ian Perry, R., Risien, C. M., Robert, M., Ross, T., Kipp Shearman, R., Schumacker, J., Siedlecki, S. A., Trainer, V. L., Waterman, S., &  Wingard, C. E. (2019). Better Regional Ocean Observing Through Cross-National Cooperation: A Case Study From the Northeast Pacific. Frontiers in Marine Science, 6, 93. https://doi.org/10.3389/fmars.2019.00093

Alistair J Hobday, Jason R Hartog, John P Manderson, Katherine E Mills, Matthew J Oliver, Andrew J Pershing, Samantha Siedlecki, Handling editor: Howard Browman, (2019) Ethical considerations and unanticipated consequences associated with ecological forecasting for marine resources, ICES Journal of Marine Science, , fsy210, https://doi.org/10.1093/icesjms/fsy210

Pilcher DJ, Naiman DM, Cross JN, Hermann AJ, Siedlecki SA, Gibson GA and Mathis JT (2019) Modeled Effect of Coastal Biogeochemical Processes, Climate Variability, and Ocean Acidification on Aragonite Saturation State in the Bering Sea. Front. Mar. Sci. 5:508. doi: 10.3389/fmars.2018.00508

Pershing, A.J., R.B. Griffis, E.B. Jewett, C.T. Armstrong, J.F. Bruno, D.S. Busch, A.C. Haynie, S.A. Siedlecki, and D. Tommasi, 2018: Oceans and Marine Resources. In Impacts, Risks, and Adaptation in the United States: Fourth National Climate Assessment, Volume II [Reidmiller, D.R., C.W. Avery, D.R. Easterling, K.E. Kunkel, K.L.M. Lewis, T.K. Maycock, and B.C. Stewart (eds.)]. U.S. Global Change Research Program, Washington, DC, USA. doi: 10.7930/NCA4.2018.CH9

Pilcher, D. J., Siedlecki, S. A., Hermann, A. J., Coyle, K. O., Mathis, J. T., & Evans, W. (2018). Simulated impact of glacial runoff on CO2 uptake in the Gulf of Alaska. Geophysical Research Letters, 45, 880–890. https://doi.org/10.1002/ 2017GL075910

Siedlecki, S. A., Pilcher, D. J., Hermann, A. J., Coyle, K., & Mathis, J. (2017). The importance of freshwater to spatial variability of aragonite saturation state in the Gulf of Alaska. Journal of Geophysical Research: Oceans, 122. https://doi.org/10.1002/2017JC012791

Bednaršek, N., R.A. Feely, N. Tolimieri, A.J. Hermann, S.A. Siedlecki, H.O. Pörtner, G.G. Waldbusser, P. McElhany, S.R. Alin, and J. Menkel (2017): Exposure history determines pteropod vulnerability to ocean acidification along the US West Coast. Scientific Reports 7, Article number: 4526,  doi:10.1038/s41598-017-03934-z

Carter, B.R., Feely, R.A., Mecking, S., Cross, J. N., Macdonald, A.M., Siedlecki, S.A. Talley, L., Sabine, C. L., Millero, R., Swift, J.H. , and Dickson, A. G.,  (2017) Two Decades of Pacific Anthropogenic Carbon Storage and Ocean Acidification Along GO-SHIP Sections P16 and P02, Global Biogeochem. Cycles, 31, doi:10.1002/2016GB005485.

Tommasi, D., Stock, C., Hobday, A., Methot, R., Kaplan, I., Eveson, P., Holsman, K., Miller, T.,  Gaichas, S.,  Gehlen, M.,  Pershing, A., Vecchi, G.,  Msadek, R., Delworth, T., Eakin, M., Haltuch, M., Sefarian, R., Spillman, C., Hartog, J., Siedlecki, S.,Samhouri, J., Muhling, B., Asch, R., Pinsky, M.,  Saba, V., Kapnick, S., Gaitan, C.,  Rykaczewski, R., Alexander, M., Xue, Y., Pegion, K.,  Lynch, P.,  Payne, M., Kristiansen, T., Lehodey, P., and C. Werner. Managing living marine resources in a dynamic environment: The role of seasonal to decadal climate forecasts, Progress in Oceanography, Volume 152, March 2017, Pages 15-49, ISSN 0079-6611, http://dx.doi.org/10.1016/j.pocean.2016.12.011.
(http://www.sciencedirect.com/science/article/pii/S0079661116301586)

S. McClatchie, A. R. Thompson, S. R. Alin, S. J. Bograd, S.A. Siedlecki, W. Watson, (2016) The influence of Pacific Equatorial Water on fish diversity in the southern California Current System, JGR-Oceans, doi:10.1002/2016JC011672

Siedlecki, S.A., Kaplan, I.C., Hermann, A., Nguyen, T., Bond, N., Williams, G., Newton, J., Peterson, W. T., Alin, S., and R.A. Feely (2016) Experiments with Seasonal Forecasts of ocean conditions for the Northern region of the California Current upwelling system, Nature: Scientific Reports 6, doi:10.1038/srep27203

Harrison, C.S., Hales, B., Siedlecki, S.A., and Samelson, R.M., Potential and timescales for oxygen depletion in coastal upwelling systems: Idealized model analysis (2016) JGR-Oceans 121, doi:10.1002/2015JC011328.

Kaplan, I, Williams, G, Bond, N, Hermann, A, and Siedlecki, SA (2016) Cloudy with a chance of sardines:  forecasting sardine distributions using regional climate models, Fisheries Oceanography 25:1, 15-27. doi: 10.1111/fog.12131

 

Siedlecki, S.A., Banas, N., Davis, K.A., Giddings, S., Hickey, B.M., MacCready, P., Connolly, T., and S. Geier, Seasonal and interannual oxygen variability on the Washington and Oregon continental shelves, (2015), J. Geophys. Res. Oceans, 120, DOI: 10.1002/2014JC010254

 

Davis, K. A., N. S. Banas, S. N. Giddings, S. A. Siedlecki, P. MacCready, E. J. Lessard, R. M. Kudela, and B. M. Hickey (2014), Estuary-enhanced upwelling of marine nutrients fuels coastal productivity in the U.S. Pacific Northwest, J. Geophys. Res. Oceans, 119, 8778–8799, doi:10.1002/2014JC010248.

 

Giddings, SN, MacCready, P, Hickey, BM, Banas, NS, Davis, KA, Siedlecki, SA, Trainer, VL, Kudela, RM, Pelland, NA, and Connolly, TP. (2014) Hindcasts of harmful algal bloom transport on the Pacific Northwest coast, JGR-oceans, 119(4), 2439-2461. doi: 10.1002/2013/JC009622.

 

Siedlecki, SA, Mahadevan, A, and Archer, DE (2012) The Coastal Ocean as a Supplier of Global Iron: Mechanisms for Iron Export in an Upwelling Regime, Geophysical Research Letters 39, DOI:10.1029/2011GL050366

 

Siedlecki SA, Archer, DE, and Mahadevan, A (2011) Mechanisms for nutrient exchange and ventilation in the coastal ocean: an idealized model for the East Coast of the US, Journal of Geophysical Research – Oceans 116

 

Loubere P, Siedlecki SA, and Bradtmiller LI (2007) Organic carbon and carbonate fluxes: Links to climate change DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY 54 (5-7): 437-446

 

Brunner, C.A., Andres, M., Holbourn, A.E., Siedlecki, S., Brooks, G.R., Molina Garza, R.S, Fuller, M.D., Ladner, B.C., Hine, A.C., and Li, Q., 2002. Quaternary planktonic foraminiferal biostratigraphy, ODP Leg 182 sites. In Hine, A.C., Feary, D.A., and Malone, M.J. (Eds.), Proc. ODP, Sci. Results, 182 [Online]. Available from World Wide Web: <http://www.odp.tamu.edu/publications/182_SR/011/011.htm>.

Reports:

 

Harvey, C., N. Garfield, G. Williams, N. Tolimieri, I. Schroeder, K. Andrews, K. Barnas, E. Bjorkstedt, S. Bograd, R. Brodeur, B. Burke, J. Cope, A. Coyne, L. deWitt, J. Dowell, J. Field, J. Fisher, P. Frey, T. Good, C. Greene, E. Hazen, D. Holland, M. Hunter, K. Jacobson, M. Jacox, C. Juhasz, I. Kaplan, S. Kasperski, D. Lawson, A. Leising, A. Manderson, S. Melin, S. Moore, C. Morgan, B. Muhling, S. Munsch, K. Norman, R. Robertson, L. Rogers-Bennett, K. Sakuma, J. Samhouri, R. Selden, S. Siedlecki, K. Somers, W. Sydeman, A. Thompson, J. Thorson, D. Tommasi, V. Trainer, A. Varney, B. Wells, C. Whitmire, M. Williams, T. Williams, J. Zamon, and S. Zeman. 2019. Ecosystem Status Report of the California Current for 2019: A Summary of Ecosystem Indicators Compiled by the California Current Integrated Ecosystem Assessment Team (CCEIA). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-149.

Benway, H., Alin, S., Boyer, E., Cai, W.-J., Coble, P., Cross, J., Friedrichs, M., Goñi, M., Griffith, P., Herrmann, M., Lohrenz, S., Mathis, J., McKinley, G., Najjar, R., Pilskaln, C., Siedlecki, S., Smith, R., 2016. A Science Plan for Carbon Cycle Research in North American Coastal Waters. Report of the Coastal CARbon Synthesis (CCARS) community workshop, August 19-21, 2014, Ocean Carbon and Biogeochemistry Program and North American Carbon Program, 84 pp., DOI 10.1575/1912/7777.

Alin, S.R., S. Siedlecki, B. Hales, J. Mathis, W. Evans, M. Stukel, G. Gaxiola-Castro, J.M. Hernandez-Ayon, L. Juranek, M. Goñi, G. Turi, J. Needoba, E. Mayorga, Z. Lachkar, N. Gruber, J. Hartmann, N. Moosdorf, R. Feely, and F. Chavez (2012): Coastal carbon synthesis for the continental shelf of the North American Pacific Coast (NAPC): Preliminary results. OCB (Ocean Carbon and Biogeochemistry) 

Ph.D. Dissertation:

The Role of the Bottom Boundary Layer in Biogeochemical Cycles of the Coastal Ocean.Dissertation:

Advisor: Professor David Archer. 

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